py4dstem
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py4dstem
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__init__() (emdfile.Array method)
(emdfile.Custom method)
(emdfile.Metadata method)
(emdfile.Node method)
(emdfile.PointList method)
(emdfile.PointListArray method)
(emdfile.Root method)
(py4DSTEM.Array method)
(py4DSTEM.BraggVectors method)
(py4DSTEM.Calibration method)
(py4DSTEM.Custom method)
(py4DSTEM.Data method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.io.filereaders.read_K2.K2DataArray method)
(py4DSTEM.Metadata method)
(py4DSTEM.Node method)
(py4DSTEM.PointList method)
(py4DSTEM.PointListArray method)
(py4DSTEM.Probe method)
(py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
(py4DSTEM.process.classification.featurization.Featurization method)
(py4DSTEM.process.diffraction.crystal.Crystal method)
(py4DSTEM.process.diffraction.crystal_bloch.DynamicalMatrixCache method)
(py4DSTEM.process.diffraction.crystal_phase.Crystal_Phase method)
(py4DSTEM.process.diffraction.utils.Orientation method)
(py4DSTEM.process.diffraction.utils.OrientationMap method)
(py4DSTEM.process.phase.iterative_dpc.DPCReconstruction method)
(py4DSTEM.process.phase.iterative_mixedstate_ptychography.MixedstatePtychographicReconstruction method)
(py4DSTEM.process.phase.iterative_multislice_ptychography.MultislicePtychographicReconstruction method)
(py4DSTEM.process.phase.iterative_overlap_tomography.OverlapTomographicReconstruction method)
(py4DSTEM.process.phase.iterative_parallax.ParallaxReconstruction method)
(py4DSTEM.process.phase.iterative_simultaneous_ptychography.SimultaneousPtychographicReconstruction method)
(py4DSTEM.process.phase.utils.AffineTransform method)
(py4DSTEM.process.phase.utils.ComplexProbe method)
(py4DSTEM.process.wholepatternfit.wp_models.ComplexOverlapKernelDiskLattice method)
(py4DSTEM.process.wholepatternfit.wp_models.DCBackground method)
(py4DSTEM.process.wholepatternfit.wp_models.GaussianBackground method)
(py4DSTEM.process.wholepatternfit.wp_models.GaussianRing method)
(py4DSTEM.process.wholepatternfit.wp_models.KernelDiskLattice method)
(py4DSTEM.process.wholepatternfit.wp_models.SyntheticDiskLattice method)
(py4DSTEM.process.wholepatternfit.wp_models.SyntheticDiskMoire method)
(py4DSTEM.process.wholepatternfit.wp_models.WPFModel method)
(py4DSTEM.QPoints method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
_get_EMD_version() (in module emdfile)
_is_EMD_file() (in module emdfile)
_show_grid_overlay() (in module py4DSTEM.visualize.vis_grid)
_version_is_geq() (in module emdfile)
A
aberration_correct() (py4DSTEM.process.phase.iterative_parallax.ParallaxReconstruction method)
aberration_fit() (py4DSTEM.process.phase.iterative_parallax.ParallaxReconstruction method)
accept() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
add() (emdfile.PointList method)
(py4DSTEM.DataCube method)
(py4DSTEM.PointList method)
(py4DSTEM.QPoints method)
add_annuli() (in module py4DSTEM.visualize.overlay)
add_bragg_index_labels() (in module py4DSTEM.visualize.overlay)
(in module py4DSTEM.visualize.vis_special)
add_cartesian_grid() (in module py4DSTEM.visualize.overlay)
add_circles() (in module py4DSTEM.visualize.overlay)
add_data_by_field() (emdfile.PointList method)
(py4DSTEM.PointList method)
(py4DSTEM.QPoints method)
add_ellipses() (in module py4DSTEM.visualize.overlay)
(in module py4DSTEM.visualize.vis_special)
add_features() (py4DSTEM.process.classification.featurization.Featurization method)
add_fields() (emdfile.PointList method)
(emdfile.PointListArray method)
(py4DSTEM.PointList method)
(py4DSTEM.PointListArray method)
(py4DSTEM.QPoints method)
add_grid_overlay() (in module py4DSTEM.visualize.overlay)
(in module py4DSTEM.visualize.vis_grid)
add_pointlabels() (in module py4DSTEM.visualize.overlay)
(in module py4DSTEM.visualize.vis_special)
add_points() (in module py4DSTEM.visualize.overlay)
(in module py4DSTEM.visualize.vis_special)
add_polarelliptical_grid() (in module py4DSTEM.visualize.overlay)
add_rectangles() (in module py4DSTEM.visualize.overlay)
add_rtheta_grid() (in module py4DSTEM.visualize.overlay)
add_scalebar() (in module py4DSTEM.visualize.overlay)
(in module py4DSTEM.visualize.vis_special)
add_to_2D_array_from_floats() (in module py4DSTEM.process.utils.utils)
add_to_tree() (emdfile.Node method)
(py4DSTEM.Array method)
(py4DSTEM.BraggVectors method)
(py4DSTEM.Custom method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.Node method)
(py4DSTEM.PointList method)
(py4DSTEM.PointListArray method)
(py4DSTEM.Probe method)
(py4DSTEM.QPoints method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
add_vector() (in module py4DSTEM.visualize.overlay)
(in module py4DSTEM.visualize.vis_special)
AffineTransform (class in py4DSTEM.process.phase.utils)
align_and_shift_images() (in module py4DSTEM.process.utils.cross_correlate)
align_images_fourier() (in module py4DSTEM.process.utils.cross_correlate)
angular_sampling (py4DSTEM.process.phase.iterative_base_class.PtychographicReconstruction property)
Array (class in emdfile)
(class in py4DSTEM)
array_slice() (in module py4DSTEM.process.phase.utils)
asarray() (py4DSTEM.process.phase.utils.AffineTransform method)
asarray3() (py4DSTEM.process.phase.utils.AffineTransform method)
astuple() (py4DSTEM.process.phase.utils.AffineTransform method)
atomic_colors() (in module py4DSTEM.process.diffraction.crystal_viz)
attach() (py4DSTEM.BraggVectors method)
(py4DSTEM.Calibration method)
(py4DSTEM.Data method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.Probe method)
(py4DSTEM.QPoints method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
attach_datacube() (py4DSTEM.process.phase.iterative_base_class.PhaseReconstruction method)
ax_addaxes() (in module py4DSTEM.visualize.vis_RQ)
(in module py4DSTEM.visualize.vis_special)
ax_addaxes_QtoR() (in module py4DSTEM.visualize.vis_RQ)
(in module py4DSTEM.visualize.vis_special)
ax_addaxes_RtoQ() (in module py4DSTEM.visualize.vis_RQ)
ax_addvector() (in module py4DSTEM.visualize.vis_RQ)
ax_addvector_QtoR() (in module py4DSTEM.visualize.vis_RQ)
ax_addvector_RtoQ() (in module py4DSTEM.visualize.vis_RQ)
B
bin2D() (in module py4DSTEM.preprocess.utils)
bin_data_diffraction() (in module py4DSTEM.preprocess.preprocess)
bin_data_mmap() (in module py4DSTEM.preprocess.preprocess)
bin_data_real() (in module py4DSTEM.preprocess.preprocess)
bin_Q() (py4DSTEM.DataCube method)
bin_Q_mmap() (py4DSTEM.DataCube method)
bin_R() (py4DSTEM.DataCube method)
braggpeak_labels (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification attribute)
BraggVectorClassification (class in py4DSTEM.process.classification.braggvectorclassification)
BraggVectors (class in py4DSTEM)
build() (py4DSTEM.process.phase.utils.ComplexProbe method)
C
cal (py4DSTEM.BraggVectors property)
calc_1D_profile() (in module py4DSTEM.process.diffraction.utils)
calculate_bragg_peak_histogram() (py4DSTEM.process.diffraction.crystal.Crystal method)
calculate_coef_strain() (in module py4DSTEM.process.rdf.amorph)
calculate_dynamical_structure_factors() (in module py4DSTEM.process.diffraction.crystal_bloch)
(py4DSTEM.process.diffraction.crystal.Crystal method)
calculate_strain() (in module py4DSTEM.process.diffraction.crystal_ACOM)
(py4DSTEM.process.diffraction.crystal.Crystal method)
calculate_structure_factors() (py4DSTEM.process.diffraction.crystal.Crystal method)
calculate_thresholds() (in module py4DSTEM.preprocess.electroncount)
calibrate() (py4DSTEM.BraggVectors method)
(py4DSTEM.DataCube method)
calibrate_pixel_size() (in module py4DSTEM.process.diffraction.crystal_calibrate)
(py4DSTEM.process.diffraction.crystal.Crystal method)
calibrate_unit_cell() (in module py4DSTEM.process.diffraction.crystal_calibrate)
(py4DSTEM.process.diffraction.crystal.Crystal method)
Calibration (class in py4DSTEM)
cartesian_to_polar_transform_2Ddata() (in module py4DSTEM.process.phase.utils)
cartesian_to_polarelliptical_transform() (in module py4DSTEM.process.utils.elliptical_coords)
check_config() (in module py4DSTEM)
cluster_grains() (in module py4DSTEM.process.diffraction.crystal_ACOM)
(py4DSTEM.process.diffraction.crystal.Crystal method)
cluster_orientation_map() (in module py4DSTEM.process.diffraction.crystal_ACOM)
(py4DSTEM.process.diffraction.crystal.Crystal method)
compare_QR_rotation() (in module py4DSTEM.process.calibration.rotation)
Complex2RGB() (in module py4DSTEM.visualize.vis_special)
ComplexOverlapKernelDiskLattice (class in py4DSTEM.process.wholepatternfit.wp_models)
ComplexProbe (class in py4DSTEM.process.phase.utils)
compute_divergence() (in module py4DSTEM.process.phase.utils)
compute_gradient() (in module py4DSTEM.process.phase.utils)
compute_polar_stack_symmetries() (in module py4DSTEM.process.rdf.amorph)
compute_WK_factor() (in module py4DSTEM.process.diffraction.WK_scattering_factors)
concatenate_features() (py4DSTEM.process.classification.featurization.Featurization method)
consensus() (py4DSTEM.process.classification.featurization.Featurization method)
constrain_degenerate_ellipse() (in module py4DSTEM.process.calibration.ellipse)
convert_ellipse_params() (in module py4DSTEM.process.utils.elliptical_coords)
convert_ellipse_params_r() (in module py4DSTEM.process.utils.elliptical_coords)
convert_stack_polar() (in module py4DSTEM.process.rdf.amorph)
copy() (emdfile.Metadata method)
(emdfile.PointList method)
(emdfile.PointListArray method)
(py4DSTEM.DataCube method)
(py4DSTEM.Metadata method)
(py4DSTEM.PointList method)
(py4DSTEM.PointListArray method)
(py4DSTEM.QPoints method)
counted_datacube_to_pointlistarray() (in module py4DSTEM.preprocess.electroncount)
counted_pointlistarray_to_datacube() (in module py4DSTEM.preprocess.electroncount)
crop_Q() (py4DSTEM.DataCube method)
crop_R() (py4DSTEM.DataCube method)
Crystal (class in py4DSTEM.process.diffraction.crystal)
Crystal_Phase (class in py4DSTEM.process.diffraction.crystal_phase)
Custom (class in emdfile)
(class in py4DSTEM)
cut_from_tree() (emdfile.Node method)
(py4DSTEM.Array method)
(py4DSTEM.BraggVectors method)
(py4DSTEM.Custom method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.Node method)
(py4DSTEM.PointList method)
(py4DSTEM.PointListArray method)
(py4DSTEM.Probe method)
(py4DSTEM.QPoints method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
D
Data (class in py4DSTEM)
DataCube (class in py4DSTEM)
datacube_diffraction_shift() (in module py4DSTEM.preprocess.preprocess)
DCBackground (class in py4DSTEM.process.wholepatternfit.wp_models)
delete_features() (py4DSTEM.process.classification.featurization.Featurization method)
depth_section() (py4DSTEM.process.phase.iterative_parallax.ParallaxReconstruction method)
dftUpsample() (in module py4DSTEM.process.utils.multicorr)
DiffractionSlice (class in py4DSTEM)
dim() (emdfile.Array method)
(py4DSTEM.Array method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.Probe method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
dirname() (in module emdfile)
double_sided_gaussian() (in module py4DSTEM.process.calibration.ellipse)
double_sided_gaussian_fiterr() (in module py4DSTEM.process.calibration.ellipse)
DPCReconstruction (class in py4DSTEM.process.phase.iterative_dpc)
dst_I() (in module py4DSTEM.process.phase.utils)
DynamicalMatrixCache (class in py4DSTEM.process.diffraction.crystal_bloch)
E
electron_count() (in module py4DSTEM.preprocess.electroncount)
electron_count_GPU() (in module py4DSTEM.preprocess.electroncount)
ellipse_err() (in module py4DSTEM.process.calibration.ellipse)
elliptical_resample() (in module py4DSTEM.process.utils.elliptical_coords)
elliptical_resample_datacube() (in module py4DSTEM.process.utils.elliptical_coords)
estimate_global_transformation() (in module py4DSTEM.process.phase.utils)
estimate_global_transformation_ransac() (in module py4DSTEM.process.phase.utils)
excitation_errors() (py4DSTEM.process.diffraction.crystal.Crystal method)
F
Featurization (class in py4DSTEM.process.classification.featurization)
fft_shift() (in module py4DSTEM.process.phase.utils)
filter_2D_maxima() (in module py4DSTEM.preprocess.utils)
filter_hot_pixels() (in module py4DSTEM.preprocess.preprocess)
(py4DSTEM.DataCube method)
find_Bragg_disks() (py4DSTEM.DataCube method)
fit_1D_gaussian() (in module py4DSTEM.process.fit.fit)
fit_2D() (in module py4DSTEM.process.fit.fit)
fit_2D_polar_gaussian() (in module py4DSTEM.process.fit.fit)
fit_ellipse_1D() (in module py4DSTEM.process.calibration.ellipse)
fit_ellipse_amorphous_ring() (in module py4DSTEM.process.calibration.ellipse)
fit_origin() (in module py4DSTEM.process.calibration.origin)
(py4DSTEM.BraggVectors method)
fit_p_ellipse() (py4DSTEM.BraggVectors method)
fit_scattering_factor() (in module py4DSTEM.process.rdf.rdf)
fit_stack() (in module py4DSTEM.process.rdf.amorph)
force_add_to_tree() (emdfile.Node method)
(py4DSTEM.Array method)
(py4DSTEM.BraggVectors method)
(py4DSTEM.Custom method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.Node method)
(py4DSTEM.PointList method)
(py4DSTEM.PointListArray method)
(py4DSTEM.Probe method)
(py4DSTEM.QPoints method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
fourier_resample() (in module py4DSTEM.process.utils.utils)
fourier_ring_correlation() (in module py4DSTEM.process.phase.utils)
fourier_rotate_real_volume() (in module py4DSTEM.process.phase.utils)
fourier_translation_operator() (in module py4DSTEM.process.phase.utils)
from_braggvectors() (py4DSTEM.process.classification.featurization.Featurization method)
from_CIF() (py4DSTEM.process.diffraction.crystal.Crystal method)
from_h5() (emdfile.Metadata class method)
(emdfile.Node class method)
(py4DSTEM.Array class method)
(py4DSTEM.BraggVectors class method)
(py4DSTEM.Calibration class method)
(py4DSTEM.Custom class method)
(py4DSTEM.DataCube class method)
(py4DSTEM.DiffractionSlice class method)
(py4DSTEM.Metadata class method)
(py4DSTEM.Node class method)
(py4DSTEM.PointList class method)
(py4DSTEM.PointListArray class method)
(py4DSTEM.Probe class method)
(py4DSTEM.QPoints class method)
(py4DSTEM.RealSlice class method)
(py4DSTEM.VirtualDiffraction class method)
(py4DSTEM.VirtualImage class method)
from_pymatgen_structure() (py4DSTEM.process.diffraction.crystal.Crystal method)
from_unitcell_parameters() (py4DSTEM.process.diffraction.crystal.Crystal method)
from_vacuum_data() (py4DSTEM.Probe class method)
fromarray() (py4DSTEM.process.phase.utils.AffineTransform class method)
G
GaussianBackground (class in py4DSTEM.process.wholepatternfit.wp_models)
GaussianRing (class in py4DSTEM.process.wholepatternfit.wp_models)
gdrive_download() (in module py4DSTEM.io.google_drive_downloader)
generate_CBED() (in module py4DSTEM.process.diffraction.crystal_bloch)
(py4DSTEM.process.diffraction.crystal.Crystal method)
generate_diffraction_pattern() (py4DSTEM.process.diffraction.crystal.Crystal method)
generate_dynamical_diffraction_pattern() (in module py4DSTEM.process.diffraction.crystal_bloch)
(py4DSTEM.process.diffraction.crystal.Crystal method)
generate_moire_diffraction_pattern() (in module py4DSTEM.process.diffraction.crystal)
generate_ring_pattern() (py4DSTEM.process.diffraction.crystal.Crystal method)
generate_synthetic_probe() (py4DSTEM.Probe class method)
get_1D_polar_background() (in module py4DSTEM.preprocess.radialbkgrd)
get_2D_polar_background() (in module py4DSTEM.preprocess.radialbkgrd)
get_background_streaks() (in module py4DSTEM.preprocess.darkreference)
get_background_streaks_x() (in module py4DSTEM.preprocess.darkreference)
get_background_streaks_y() (in module py4DSTEM.preprocess.darkreference)
get_beamstop_mask() (in module py4DSTEM.process.utils.masks)
(py4DSTEM.DataCube method)
get_bksbtr_DP() (in module py4DSTEM.preprocess.darkreference)
get_bragg_vector_map() (py4DSTEM.BraggVectors method)
get_braggmask() (py4DSTEM.DataCube method)
get_braggpeak_labels_by_scan_position() (in module py4DSTEM.process.classification.braggvectorclassification)
get_bvm() (py4DSTEM.BraggVectors method)
get_calibrated_detector_geometry() (py4DSTEM.DataCube static method)
get_candidate_class() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
get_candidate_class_BPs() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
get_candidate_class_image() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
get_class() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
get_class_BPs() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
get_class_DP() (in module py4DSTEM.process.classification.classutils)
get_class_DP_without_Bragg_scattering() (in module py4DSTEM.process.classification.classutils)
get_class_DPs() (py4DSTEM.process.classification.featurization.Featurization method)
get_class_image() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
get_class_ims() (py4DSTEM.process.classification.featurization.Featurization method)
get_CoM() (in module py4DSTEM.process.utils.utils)
get_cross_correlation() (in module py4DSTEM.process.utils.cross_correlate)
get_cross_correlation_FT() (in module py4DSTEM.process.utils.cross_correlate)
get_darkreference() (in module py4DSTEM.preprocess.darkreference)
get_dim() (emdfile.Array method)
(py4DSTEM.Array method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.Probe method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
get_dim_name() (emdfile.Array method)
(py4DSTEM.Array method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.Probe method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
get_dim_units() (emdfile.Array method)
(py4DSTEM.Array method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.Probe method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
get_dp_max() (py4DSTEM.DataCube method)
get_dp_mean() (py4DSTEM.DataCube method)
get_dp_median() (py4DSTEM.DataCube method)
get_dq_from_indexed_peaks() (in module py4DSTEM.process.calibration.qpixelsize)
get_ewpc_filter_function() (in module py4DSTEM.process.utils.utils)
get_from_tree() (emdfile.Node method)
(py4DSTEM.Array method)
(py4DSTEM.BraggVectors method)
(py4DSTEM.Custom method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.Node method)
(py4DSTEM.PointList method)
(py4DSTEM.PointListArray method)
(py4DSTEM.Probe method)
(py4DSTEM.QPoints method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
get_hdr_bits() (in module py4DSTEM.io.filereaders.read_mib)
get_initial_classes() (in module py4DSTEM.process.classification.braggvectorclassification)
get_initial_classes_by_cooccurrence() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
get_initial_classes_from_images() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
get_kernel() (py4DSTEM.Probe method)
get_local_ave_dp() (py4DSTEM.DataCube method)
get_mask() (in module py4DSTEM.process.rdf.rdf)
get_masked_peaks() (py4DSTEM.BraggVectors method)
get_maxima_1D() (in module py4DSTEM.process.utils.utils)
get_maxima_2D() (in module py4DSTEM.preprocess.utils)
get_mib_depth() (in module py4DSTEM.io.filereaders.read_mib)
get_mib_memmap() (in module py4DSTEM.io.filereaders.read_mib)
get_N_dataobjects() (in module py4DSTEM.io.legacy.read_utils)
get_nice_spacing() (in module py4DSTEM.visualize.overlay)
get_origin() (in module py4DSTEM.process.calibration.origin)
get_origin_beamstop() (in module py4DSTEM.process.calibration.origin)
get_origin_single_dp() (in module py4DSTEM.process.calibration.origin)
get_origin_single_dp_beamstop() (in module py4DSTEM.process.calibration.origin)
get_phi() (in module py4DSTEM.process.rdf.rdf)
get_pointlist() (emdfile.PointListArray method)
(py4DSTEM.PointListArray method)
get_probe_kernel_edge_gaussian() (py4DSTEM.Probe static method)
get_probe_kernel_edge_sigmoid() (py4DSTEM.Probe static method)
get_probe_kernel_flat() (py4DSTEM.Probe static method)
get_probe_size() (in module py4DSTEM.process.calibration.probe)
(py4DSTEM.DataCube method)
get_py4DSTEM_topgroups() (in module py4DSTEM.io.legacy.read_utils)
get_py4DSTEM_version() (in module py4DSTEM.io.legacy.read_utils)
get_Q_pixel_size() (in module py4DSTEM.process.calibration.qpixelsize)
get_Qvector_from_Rvector() (in module py4DSTEM.process.calibration.rotation)
get_qx_qy_1d() (in module py4DSTEM.process.utils.utils)
get_radial_bkgrnd() (py4DSTEM.DataCube method)
get_radial_bksb_dp() (py4DSTEM.DataCube method)
get_radial_intensity() (in module py4DSTEM.process.rdf.rdf)
get_rdf() (in module py4DSTEM.process.rdf.rdf)
get_Rvector_from_Qvector() (in module py4DSTEM.process.calibration.rotation)
get_shift() (in module py4DSTEM.process.utils.cross_correlate)
get_shifted_ar() (in module py4DSTEM.preprocess.utils)
get_strained_crystal() (py4DSTEM.process.diffraction.crystal.Crystal method)
get_UUID() (in module py4DSTEM.io.legacy.read_utils)
get_vacuum_probe() (py4DSTEM.DataCube method)
get_vectors() (py4DSTEM.BraggVectors method)
get_virtual_diffraction() (py4DSTEM.DataCube method)
get_virtual_image() (py4DSTEM.BraggVectors method)
(py4DSTEM.DataCube method)
get_voronoi_vertices() (in module py4DSTEM.process.utils.utils)
GMM() (py4DSTEM.process.classification.featurization.Featurization method)
graft() (emdfile.Node method)
(py4DSTEM.Array method)
(py4DSTEM.BraggVectors method)
(py4DSTEM.Custom method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.Node method)
(py4DSTEM.PointList method)
(py4DSTEM.PointListArray method)
(py4DSTEM.Probe method)
(py4DSTEM.QPoints method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
H
histogram() (py4DSTEM.BraggVectors method)
I
ICA() (py4DSTEM.process.classification.featurization.Featurization method)
idst_I() (in module py4DSTEM.process.phase.utils)
import_file() (in module py4DSTEM)
(in module py4DSTEM.io.importfile)
is_color_like() (in module py4DSTEM.visualize.overlay)
is_py4DSTEM_file() (in module py4DSTEM.io.legacy.read_utils)
is_py4DSTEM_version13() (in module py4DSTEM.io.legacy.read_utils)
J
join() (in module emdfile)
(in module py4DSTEM)
K
K2DataArray (class in py4DSTEM.io.filereaders.read_K2)
KernelDiskLattice (class in py4DSTEM.process.wholepatternfit.wp_models)
L
linear_interpolation_1D() (in module py4DSTEM.process.utils.utils)
linear_interpolation_2D() (in module py4DSTEM.preprocess.utils)
load_mib() (in module py4DSTEM.io.filereaders.read_mib)
M
make_array_rfft_compatible() (in module py4DSTEM.process.phase.utils)
make_axes_locatable() (in module py4DSTEM.visualize.vis_special)
make_bragg_mask() (py4DSTEM.DataCube method)
make_circular_mask() (in module py4DSTEM.process.utils.masks)
make_detector() (py4DSTEM.DataCube static method)
make_flowline_combined_image() (in module py4DSTEM.process.diffraction.flowlines)
make_flowline_map() (in module py4DSTEM.process.diffraction.flowlines)
make_flowline_rainbow_image() (in module py4DSTEM.process.diffraction.flowlines)
make_flowline_rainbow_legend() (in module py4DSTEM.process.diffraction.flowlines)
make_Fourier_coords2D() (in module py4DSTEM.preprocess.utils)
(in module py4DSTEM.process.utils.utils)
make_orientation_histogram() (in module py4DSTEM.process.diffraction.flowlines)
manageHeader() (in module py4DSTEM.io.filereaders.read_mib)
mask_in_Q() (py4DSTEM.BraggVectors method)
mask_in_R() (py4DSTEM.BraggVectors method)
match_orientations() (in module py4DSTEM.process.diffraction.crystal_ACOM)
(py4DSTEM.process.diffraction.crystal.Crystal method)
match_single_pattern() (in module py4DSTEM.process.diffraction.crystal_ACOM)
(py4DSTEM.process.diffraction.crystal.Crystal method)
max_feature() (py4DSTEM.process.classification.featurization.Featurization method)
mean_feature() (py4DSTEM.process.classification.featurization.Featurization method)
measure_disk() (py4DSTEM.Probe method)
measure_origin() (py4DSTEM.BraggVectors method)
measure_origin_beamstop() (py4DSTEM.BraggVectors method)
median_feature() (py4DSTEM.process.classification.featurization.Featurization method)
merge() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
merge_by_class_index() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
merge_iterative() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
Metadata (class in emdfile)
(class in py4DSTEM)
MinMaxScaler() (py4DSTEM.process.classification.featurization.Featurization method)
MixedstatePtychographicReconstruction (class in py4DSTEM.process.phase.iterative_mixedstate_ptychography)
module
py4DSTEM.io
py4DSTEM.io.filereaders
py4DSTEM.io.filereaders.empad
py4DSTEM.io.filereaders.read_K2
py4DSTEM.io.filereaders.read_mib
py4DSTEM.io.google_drive_downloader
py4DSTEM.io.google_drive_downloader.gdown
py4DSTEM.io.importfile
py4DSTEM.io.legacy
py4DSTEM.io.legacy.h5py
py4DSTEM.io.legacy.legacy12
py4DSTEM.io.legacy.legacy13
py4DSTEM.io.legacy.read_legacy_12
py4DSTEM.io.legacy.read_legacy_13
py4DSTEM.io.legacy.read_utils
py4DSTEM.io.parsefiletype
py4DSTEM.preprocess.darkreference
py4DSTEM.preprocess.electroncount
py4DSTEM.preprocess.preprocess
py4DSTEM.preprocess.radialbkgrd
py4DSTEM.preprocess.utils
py4DSTEM.process
py4DSTEM.process.calibration
py4DSTEM.process.calibration.ellipse
py4DSTEM.process.calibration.origin
py4DSTEM.process.calibration.probe
py4DSTEM.process.calibration.qpixelsize
py4DSTEM.process.calibration.rotation
py4DSTEM.process.classification
py4DSTEM.process.classification.braggvectorclassification
py4DSTEM.process.classification.classutils
py4DSTEM.process.classification.featurization
py4DSTEM.process.diffraction
py4DSTEM.process.diffraction.crystal
py4DSTEM.process.diffraction.crystal_ACOM
py4DSTEM.process.diffraction.crystal_bloch
py4DSTEM.process.diffraction.crystal_calibrate
py4DSTEM.process.diffraction.crystal_phase
py4DSTEM.process.diffraction.crystal_viz
py4DSTEM.process.diffraction.flowlines
py4DSTEM.process.diffraction.sys
py4DSTEM.process.diffraction.utils
py4DSTEM.process.diffraction.WK_scattering_factors
py4DSTEM.process.fit
py4DSTEM.process.fit.fit
py4DSTEM.process.phase
py4DSTEM.process.phase.iterative_base_class
py4DSTEM.process.phase.iterative_dpc
py4DSTEM.process.phase.iterative_mixedstate_ptychography
py4DSTEM.process.phase.iterative_multislice_ptychography
py4DSTEM.process.phase.iterative_overlap_tomography
py4DSTEM.process.phase.iterative_parallax
py4DSTEM.process.phase.iterative_simultaneous_ptychography
py4DSTEM.process.phase.utils
py4DSTEM.process.rdf.amorph
py4DSTEM.process.rdf.rdf
py4DSTEM.process.utils
py4DSTEM.process.utils.cross_correlate
py4DSTEM.process.utils.elliptical_coords
py4DSTEM.process.utils.masks
py4DSTEM.process.utils.multicorr
py4DSTEM.process.utils.utils
py4DSTEM.process.wholepatternfit
py4DSTEM.process.wholepatternfit.wp_models
py4DSTEM.process.wholepatternfit.wpf
py4DSTEM.process.wholepatternfit.wpf_viz
MultislicePtychographicReconstruction (class in py4DSTEM.process.phase.iterative_multislice_ptychography)
N
N_feat (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification attribute)
N_meas (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification attribute)
newnode() (emdfile.Node static method)
(py4DSTEM.Array static method)
(py4DSTEM.BraggVectors static method)
(py4DSTEM.Custom static method)
(py4DSTEM.DataCube static method)
(py4DSTEM.DiffractionSlice static method)
(py4DSTEM.Node static method)
(py4DSTEM.PointList static method)
(py4DSTEM.PointListArray static method)
(py4DSTEM.Probe static method)
(py4DSTEM.QPoints static method)
(py4DSTEM.RealSlice static method)
(py4DSTEM.VirtualDiffraction static method)
(py4DSTEM.VirtualImage static method)
nmf() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
NMF() (py4DSTEM.process.classification.featurization.Featurization method)
Node (class in emdfile)
(class in py4DSTEM)
O
object_cropped (py4DSTEM.process.phase.iterative_base_class.PtychographicReconstruction property)
(py4DSTEM.process.phase.iterative_parallax.ParallaxReconstruction property)
(py4DSTEM.process.phase.iterative_simultaneous_ptychography.SimultaneousPtychographicReconstruction property)
object_fft (py4DSTEM.process.phase.iterative_base_class.PtychographicReconstruction property)
Orientation (class in py4DSTEM.process.diffraction.utils)
orientation_correlation() (in module py4DSTEM.process.diffraction.flowlines)
orientation_plan() (in module py4DSTEM.process.diffraction.crystal_ACOM)
(py4DSTEM.process.diffraction.crystal.Crystal method)
OrientationMap (class in py4DSTEM.process.diffraction.utils)
OverlapTomographicReconstruction (class in py4DSTEM.process.phase.iterative_overlap_tomography)
P
pad_data_diffraction() (in module py4DSTEM.preprocess.preprocess)
pad_Q() (py4DSTEM.DataCube method)
ParallaxReconstruction (class in py4DSTEM.process.phase.iterative_parallax)
parse_hdr() (in module py4DSTEM.io.filereaders.read_mib)
PCA() (py4DSTEM.process.classification.featurization.Featurization method)
PhaseReconstruction (class in py4DSTEM.process.phase.iterative_base_class)
plot_all_phase_maps() (py4DSTEM.process.diffraction.crystal_phase.Crystal_Phase method)
plot_cluster_size() (in module py4DSTEM.process.diffraction.crystal_viz)
(py4DSTEM.process.diffraction.crystal.Crystal method)
plot_clusters() (in module py4DSTEM.process.diffraction.crystal_viz)
(py4DSTEM.process.diffraction.crystal.Crystal method)
plot_diffraction_pattern() (in module py4DSTEM.process.diffraction.crystal_viz)
plot_fiber_orientation_maps() (in module py4DSTEM.process.diffraction.crystal_viz)
(py4DSTEM.process.diffraction.crystal.Crystal method)
plot_moire_diffraction_pattern() (in module py4DSTEM.process.diffraction.crystal)
plot_orientation_correlation() (in module py4DSTEM.process.diffraction.flowlines)
plot_orientation_maps() (in module py4DSTEM.process.diffraction.crystal_viz)
(py4DSTEM.process.diffraction.crystal.Crystal method)
plot_orientation_plan() (in module py4DSTEM.process.diffraction.crystal_viz)
(py4DSTEM.process.diffraction.crystal.Crystal method)
plot_orientation_zones() (in module py4DSTEM.process.diffraction.crystal_viz)
(py4DSTEM.process.diffraction.crystal.Crystal method)
plot_position_correction() (py4DSTEM.process.phase.iterative_base_class.PtychographicReconstruction method)
plot_ring_pattern() (in module py4DSTEM.process.diffraction.crystal_viz)
plot_scattering_intensity() (in module py4DSTEM.process.diffraction.crystal_viz)
(py4DSTEM.process.diffraction.crystal.Crystal method)
plot_strains() (in module py4DSTEM.process.rdf.amorph)
plot_structure() (in module py4DSTEM.process.diffraction.crystal_viz)
(py4DSTEM.process.diffraction.crystal.Crystal method)
plot_structure_factors() (in module py4DSTEM.process.diffraction.crystal_viz)
(py4DSTEM.process.diffraction.crystal.Crystal method)
plot_symmetries() (in module py4DSTEM.process.rdf.amorph)
PointList (class in emdfile)
(class in py4DSTEM)
PointListArray (class in emdfile)
(class in py4DSTEM)
polar_aliases (in module py4DSTEM.process.phase.utils)
polar_coordinates() (py4DSTEM.process.phase.utils.ComplexProbe method)
polar_symbols (in module py4DSTEM.process.phase.utils)
polar_to_cartesian_transform_2Ddata() (in module py4DSTEM.process.phase.utils)
position_detector() (py4DSTEM.DataCube method)
positions (py4DSTEM.process.diffraction.crystal.Crystal attribute)
(py4DSTEM.process.phase.iterative_base_class.PtychographicReconstruction property)
(py4DSTEM.process.phase.iterative_overlap_tomography.OverlapTomographicReconstruction property)
preconditioned_laplacian() (in module py4DSTEM.process.phase.utils)
preconditioned_poisson_solver() (in module py4DSTEM.process.phase.utils)
preprocess() (py4DSTEM.process.phase.iterative_dpc.DPCReconstruction method)
(py4DSTEM.process.phase.iterative_mixedstate_ptychography.MixedstatePtychographicReconstruction method)
(py4DSTEM.process.phase.iterative_multislice_ptychography.MultislicePtychographicReconstruction method)
(py4DSTEM.process.phase.iterative_overlap_tomography.OverlapTomographicReconstruction method)
(py4DSTEM.process.phase.iterative_parallax.ParallaxReconstruction method)
(py4DSTEM.process.phase.iterative_simultaneous_ptychography.SimultaneousPtychographicReconstruction method)
print_h5_tree() (in module emdfile)
(in module py4DSTEM)
print_v13h5_tree() (in module py4DSTEM.io.legacy.read_legacy_13)
print_v13h5pyFile_tree() (in module py4DSTEM.io.legacy.read_legacy_13)
Probe (class in py4DSTEM)
probe_centered (py4DSTEM.process.phase.iterative_base_class.PtychographicReconstruction property)
probe_fourier (py4DSTEM.process.phase.iterative_base_class.PtychographicReconstruction property)
project_vector_field_divergence() (in module py4DSTEM.process.phase.utils)
PtychographicReconstruction (class in py4DSTEM.process.phase.iterative_base_class)
py4DSTEM.io
module
py4DSTEM.io.filereaders
module
py4DSTEM.io.filereaders.empad
module
py4DSTEM.io.filereaders.read_K2
module
py4DSTEM.io.filereaders.read_mib
module
py4DSTEM.io.google_drive_downloader
module
py4DSTEM.io.google_drive_downloader.gdown
module
py4DSTEM.io.importfile
module
py4DSTEM.io.legacy
module
py4DSTEM.io.legacy.h5py
module
py4DSTEM.io.legacy.legacy12
module
py4DSTEM.io.legacy.legacy13
module
py4DSTEM.io.legacy.read_legacy_12
module
py4DSTEM.io.legacy.read_legacy_13
module
py4DSTEM.io.legacy.read_utils
module
py4DSTEM.io.parsefiletype
module
py4DSTEM.preprocess.darkreference
module
py4DSTEM.preprocess.electroncount
module
py4DSTEM.preprocess.preprocess
module
py4DSTEM.preprocess.radialbkgrd
module
py4DSTEM.preprocess.utils
module
py4DSTEM.process
module
py4DSTEM.process.calibration
module
py4DSTEM.process.calibration.ellipse
module
py4DSTEM.process.calibration.origin
module
py4DSTEM.process.calibration.probe
module
py4DSTEM.process.calibration.qpixelsize
module
py4DSTEM.process.calibration.rotation
module
py4DSTEM.process.classification
module
py4DSTEM.process.classification.braggvectorclassification
module
py4DSTEM.process.classification.classutils
module
py4DSTEM.process.classification.featurization
module
py4DSTEM.process.diffraction
module
py4DSTEM.process.diffraction.crystal
module
py4DSTEM.process.diffraction.crystal_ACOM
module
py4DSTEM.process.diffraction.crystal_bloch
module
py4DSTEM.process.diffraction.crystal_calibrate
module
py4DSTEM.process.diffraction.crystal_phase
module
py4DSTEM.process.diffraction.crystal_viz
module
py4DSTEM.process.diffraction.flowlines
module
py4DSTEM.process.diffraction.sys
module
py4DSTEM.process.diffraction.utils
module
py4DSTEM.process.diffraction.WK_scattering_factors
module
py4DSTEM.process.fit
module
py4DSTEM.process.fit.fit
module
py4DSTEM.process.phase
module
py4DSTEM.process.phase.iterative_base_class
module
py4DSTEM.process.phase.iterative_dpc
module
py4DSTEM.process.phase.iterative_mixedstate_ptychography
module
py4DSTEM.process.phase.iterative_multislice_ptychography
module
py4DSTEM.process.phase.iterative_overlap_tomography
module
py4DSTEM.process.phase.iterative_parallax
module
py4DSTEM.process.phase.iterative_simultaneous_ptychography
module
py4DSTEM.process.phase.utils
module
py4DSTEM.process.rdf.amorph
module
py4DSTEM.process.rdf.rdf
module
py4DSTEM.process.utils
module
py4DSTEM.process.utils.cross_correlate
module
py4DSTEM.process.utils.elliptical_coords
module
py4DSTEM.process.utils.masks
module
py4DSTEM.process.utils.multicorr
module
py4DSTEM.process.utils.utils
module
py4DSTEM.process.wholepatternfit
module
py4DSTEM.process.wholepatternfit.wp_models
module
py4DSTEM.process.wholepatternfit.wpf
module
py4DSTEM.process.wholepatternfit.wpf_viz
module
Q
QPoints (class in py4DSTEM)
quantify_phase() (py4DSTEM.process.diffraction.crystal_phase.Crystal_Phase method)
quantify_phase_pointlist() (py4DSTEM.process.diffraction.crystal_phase.Crystal_Phase method)
Qx (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification attribute)
Qy (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification attribute)
R
R_Nx (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification attribute)
R_Ny (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification attribute)
radial_elliptical_integral() (in module py4DSTEM.process.utils.elliptical_coords)
radial_integral() (in module py4DSTEM.process.utils.elliptical_coords)
radial_reduction() (in module py4DSTEM.process.utils.utils)
raw (py4DSTEM.BraggVectors property)
read() (in module emdfile)
(in module py4DSTEM)
read_empad() (in module py4DSTEM.io.filereaders.empad)
read_gatan_K2_bin() (in module py4DSTEM.io.filereaders.read_K2)
read_legacy12() (in module py4DSTEM.io.legacy.read_legacy_12)
read_legacy13() (in module py4DSTEM.io.legacy.read_legacy_13)
RealSlice (class in py4DSTEM)
reconstruct() (py4DSTEM.process.phase.iterative_dpc.DPCReconstruction method)
(py4DSTEM.process.phase.iterative_mixedstate_ptychography.MixedstatePtychographicReconstruction method)
(py4DSTEM.process.phase.iterative_multislice_ptychography.MultislicePtychographicReconstruction method)
(py4DSTEM.process.phase.iterative_overlap_tomography.OverlapTomographicReconstruction method)
(py4DSTEM.process.phase.iterative_parallax.ParallaxReconstruction method)
(py4DSTEM.process.phase.iterative_simultaneous_ptychography.SimultaneousPtychographicReconstruction method)
register_target() (py4DSTEM.Calibration method)
regularize_probe_amplitude() (in module py4DSTEM.process.phase.utils)
reinitialize_parameters() (py4DSTEM.process.phase.iterative_base_class.PhaseReconstruction method)
reject() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
remove() (emdfile.PointList method)
(py4DSTEM.PointList method)
(py4DSTEM.QPoints method)
remove_class() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
resample_data_diffraction() (in module py4DSTEM.preprocess.preprocess)
resample_Q() (py4DSTEM.DataCube method)
return_1D_profile() (in module py4DSTEM.process.phase.utils)
RIH2() (in module py4DSTEM.process.diffraction.WK_scattering_factors)
RobustScaler() (py4DSTEM.process.classification.featurization.Featurization method)
Root (class in emdfile)
rotate_point() (in module py4DSTEM.process.phase.utils)
S
sampling (py4DSTEM.process.phase.iterative_base_class.PtychographicReconstruction property)
(py4DSTEM.process.phase.iterative_dpc.DPCReconstruction property)
save() (in module emdfile)
(in module py4DSTEM)
save_ang_file() (in module py4DSTEM.process.diffraction.crystal_ACOM)
(py4DSTEM.process.diffraction.crystal.Crystal method)
sector_mask() (in module py4DSTEM.process.utils.utils)
select_point() (in module py4DSTEM.visualize.vis_special)
self_consistency_errors (py4DSTEM.process.phase.iterative_simultaneous_ptychography.SimultaneousPtychographicReconstruction property)
set_author() (in module emdfile)
set_dim() (emdfile.Array method)
(py4DSTEM.Array method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.Probe method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
set_dim_name() (emdfile.Array method)
(py4DSTEM.Array method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.Probe method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
set_dim_units() (emdfile.Array method)
(py4DSTEM.Array method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.Probe method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
set_origin_meas() (py4DSTEM.Calibration method)
set_parameters() (py4DSTEM.process.phase.utils.ComplexProbe method)
set_probe_param() (py4DSTEM.Calibration method)
set_raw_vectors() (py4DSTEM.BraggVectors method)
set_save_defaults() (py4DSTEM.process.phase.iterative_base_class.PhaseReconstruction method)
set_scan_shape() (in module py4DSTEM.preprocess.preprocess)
(py4DSTEM.DataCube method)
setcal() (py4DSTEM.BraggVectors method)
setup_diffraction() (py4DSTEM.process.diffraction.crystal.Crystal method)
shift_positive() (py4DSTEM.process.classification.featurization.Featurization method)
show() (in module py4DSTEM)
(in module py4DSTEM.visualize)
(in module py4DSTEM.visualize.vis_grid)
(in module py4DSTEM.visualize.vis_RQ)
(in module py4DSTEM.visualize.vis_special)
show_amorphous_ring_fit() (in module py4DSTEM.visualize.vis_special)
show_annuli() (in module py4DSTEM.visualize)
show_circles() (in module py4DSTEM.visualize)
show_class_BPs() (in module py4DSTEM.visualize.vis_special)
show_class_BPs_grid() (in module py4DSTEM.visualize.vis_special)
show_complex() (in module py4DSTEM.visualize.vis_special)
show_complex_CoM() (py4DSTEM.process.phase.iterative_base_class.PhaseReconstruction method)
show_depth() (py4DSTEM.process.phase.iterative_multislice_ptychography.MultislicePtychographicReconstruction method)
show_DP_grid() (in module py4DSTEM.visualize.vis_grid)
show_ellipses() (in module py4DSTEM.visualize)
show_elliptical_fit() (in module py4DSTEM.visualize.vis_special)
show_fourier_probe() (py4DSTEM.process.phase.iterative_base_class.PtychographicReconstruction method)
(py4DSTEM.process.phase.iterative_mixedstate_ptychography.MixedstatePtychographicReconstruction method)
show_grid_overlay() (in module py4DSTEM.visualize.vis_grid)
show_hist() (in module py4DSTEM.visualize)
show_image_grid() (in module py4DSTEM.visualize.vis_grid)
(in module py4DSTEM.visualize.vis_special)
show_kernel() (in module py4DSTEM.visualize.vis_special)
show_lattice_points() (in module py4DSTEM.process.wholepatternfit.wpf_viz)
show_max_peak_spacing() (in module py4DSTEM.visualize.vis_special)
show_object_fft() (py4DSTEM.process.phase.iterative_base_class.PtychographicReconstruction method)
(py4DSTEM.process.phase.iterative_overlap_tomography.OverlapTomographicReconstruction method)
show_origin_fit() (in module py4DSTEM.visualize.vis_special)
show_origin_meas() (in module py4DSTEM.visualize.vis_special)
show_pointlabels() (in module py4DSTEM.visualize.vis_special)
show_points() (in module py4DSTEM.visualize)
(in module py4DSTEM.visualize.vis_grid)
(in module py4DSTEM.visualize.vis_RQ)
show_Q() (in module py4DSTEM.visualize)
show_qprofile() (in module py4DSTEM.visualize.vis_special)
show_rectangles() (in module py4DSTEM.visualize)
show_RQ() (in module py4DSTEM.visualize.vis_RQ)
show_RQ_axes() (in module py4DSTEM.visualize.vis_RQ)
show_RQ_vector() (in module py4DSTEM.visualize.vis_RQ)
show_RQ_vectors() (in module py4DSTEM.visualize.vis_RQ)
show_selected_dp() (in module py4DSTEM.visualize.vis_RQ)
show_selected_dps() (in module py4DSTEM.visualize.vis_special)
show_shifts() (py4DSTEM.process.phase.iterative_parallax.ParallaxReconstruction method)
show_slices() (py4DSTEM.process.phase.iterative_multislice_ptychography.MultislicePtychographicReconstruction method)
show_transmitted_probe() (py4DSTEM.process.phase.iterative_multislice_ptychography.MultislicePtychographicReconstruction method)
show_tree() (emdfile.Node method)
(py4DSTEM.Array method)
(py4DSTEM.BraggVectors method)
(py4DSTEM.Custom method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.Node method)
(py4DSTEM.PointList method)
(py4DSTEM.PointListArray method)
(py4DSTEM.Probe method)
(py4DSTEM.QPoints method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
show_uncertainty_visualization() (py4DSTEM.process.phase.iterative_base_class.PtychographicReconstruction method)
(py4DSTEM.process.phase.iterative_overlap_tomography.OverlapTomographicReconstruction method)
show_voronoi() (in module py4DSTEM.visualize.vis_special)
SimultaneousPtychographicReconstruction (class in py4DSTEM.process.phase.iterative_simultaneous_ptychography)
sort() (emdfile.PointList method)
(py4DSTEM.PointList method)
(py4DSTEM.QPoints method)
sort_orientation_maps() (in module py4DSTEM.process.diffraction.utils)
spatial_frequencies() (in module py4DSTEM.process.phase.utils)
spatial_separation() (py4DSTEM.process.classification.featurization.Featurization method)
split() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
split_by_class_index() (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification method)
subdivide_into_batches() (in module py4DSTEM.process.phase.utils)
subpixel_alignment() (py4DSTEM.process.phase.iterative_parallax.ParallaxReconstruction method)
swap_Qxy() (in module py4DSTEM.preprocess.preprocess)
(py4DSTEM.DataCube method)
swap_RQ() (in module py4DSTEM.preprocess.preprocess)
(py4DSTEM.DataCube method)
swap_Rxy() (in module py4DSTEM.preprocess.preprocess)
(py4DSTEM.DataCube method)
symmetry_reduce_directions() (in module py4DSTEM.process.diffraction.crystal_ACOM)
(py4DSTEM.process.diffraction.crystal.Crystal method)
SyntheticDiskLattice (class in py4DSTEM.process.wholepatternfit.wp_models)
SyntheticDiskMoire (class in py4DSTEM.process.wholepatternfit.wp_models)
T
thin_data_real() (in module py4DSTEM.preprocess.preprocess)
thin_R() (py4DSTEM.DataCube method)
to_h5() (emdfile.Array method)
(emdfile.Custom method)
(emdfile.Metadata method)
(emdfile.Node method)
(emdfile.PointList method)
(emdfile.PointListArray method)
(py4DSTEM.Array method)
(py4DSTEM.BraggVectors method)
(py4DSTEM.Calibration method)
(py4DSTEM.Custom method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.Metadata method)
(py4DSTEM.Node method)
(py4DSTEM.PointList method)
(py4DSTEM.PointListArray method)
(py4DSTEM.Probe method)
(py4DSTEM.process.phase.iterative_base_class.PtychographicReconstruction method)
(py4DSTEM.process.phase.iterative_dpc.DPCReconstruction method)
(py4DSTEM.process.phase.iterative_parallax.ParallaxReconstruction method)
(py4DSTEM.QPoints method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
to_strainmap() (py4DSTEM.BraggVectors method)
torch_bin() (in module py4DSTEM.preprocess.electroncount)
tqdmnd() (in module emdfile)
(in module py4DSTEM)
tree() (emdfile.Node method)
(py4DSTEM.Array method)
(py4DSTEM.BraggVectors method)
(py4DSTEM.Custom method)
(py4DSTEM.DataCube method)
(py4DSTEM.DiffractionSlice method)
(py4DSTEM.Node method)
(py4DSTEM.PointList method)
(py4DSTEM.PointListArray method)
(py4DSTEM.Probe method)
(py4DSTEM.QPoints method)
(py4DSTEM.RealSlice method)
(py4DSTEM.VirtualDiffraction method)
(py4DSTEM.VirtualImage method)
tune_angle_and_defocus() (py4DSTEM.process.phase.iterative_base_class.PtychographicReconstruction method)
(py4DSTEM.process.phase.iterative_parallax.ParallaxReconstruction method)
tune_num_slices_and_thicknesses() (py4DSTEM.process.phase.iterative_multislice_ptychography.MultislicePtychographicReconstruction method)
U
unregister_target() (py4DSTEM.Calibration method)
upsampled_correlation() (in module py4DSTEM.process.utils.multicorr)
upsampleFFT() (in module py4DSTEM.process.utils.multicorr)
V
version_is_geq() (in module py4DSTEM.io.legacy.read_utils)
VirtualDiffraction (class in py4DSTEM)
VirtualImage (class in py4DSTEM)
visualize() (py4DSTEM.process.phase.iterative_dpc.DPCReconstruction method)
(py4DSTEM.process.phase.iterative_mixedstate_ptychography.MixedstatePtychographicReconstruction method)
(py4DSTEM.process.phase.iterative_multislice_ptychography.MultislicePtychographicReconstruction method)
(py4DSTEM.process.phase.iterative_overlap_tomography.OverlapTomographicReconstruction method)
(py4DSTEM.process.phase.iterative_parallax.ParallaxReconstruction method)
(py4DSTEM.process.phase.iterative_simultaneous_ptychography.SimultaneousPtychographicReconstruction method)
(py4DSTEM.process.phase.utils.ComplexProbe method)
W
WPFModel (class in py4DSTEM.process.wholepatternfit.wp_models)
WPFModelType (class in py4DSTEM.process.wholepatternfit.wp_models)
X
X (py4DSTEM.process.classification.braggvectorclassification.BraggVectorClassification attribute)
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